Publications

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Journal Article
K. J. Batenburg, S. Bals, J. Sijbers, C. Kubel, P. A. Midgley, J. C. Hernandez, U. Kaiser, E. R. Encina, E. A. Coronado, and G. Van Tendeloo, "3D imaging of nanomaterials by discrete tomography", Ultramicroscopy, vol. 109, pp. 730-740, 2009.
J. A. M. Soons, F. Danckaers, W. Keustermans, T. Huysmans, J. Sijbers, J. W. Casselman, and J. J. J. Dirckx, "3D morphometric analysis of the human incudomallear complex using clinical cone-beam CT", Hearing research, vol. 340, pp. 79-88, 2016.
D. Kazantsev, W. M. Thompson, W. R. B. Lionheart, G. Van Eyndhoven, A. P. Kaestner, K. J. Dobson, P. J. Withers, and P. D. Lee, "4D-CT reconstruction with unified spatial-temporal patch-based regularization", Inverse Problems and Imaging, vol. 9, issue 2, pp. 447-467, 2015.
U. Roine, T. Roine, J. Salmi, T. Nieminen-von Wendt, P. Tani, S. Leppämäki, P. Rintahaka, K. Caeyenberghs, A. Leemans, and M. Sams, "Abnormal wiring of the connectome in adults with high-functioning autism spectrum disorder", Molecular Autism, vol. 6, no. 1, pp. 65, 2015. Download paper (1.64 MB)
G. Thoonen, K. Hufkens, J. Vanden Borre, T. Spanhove, and P. Scheunders, "Accuracy assessment of contextual classification results for vegetation mapping", International Journal of Applied Earth Observation and Geoinformation, vol. 15, pp. 7 - 15, 2012.
W. Van Aarle, W. Ludwig, A. King, and D. Penumadu, "An accurate projection model for diffraction image formation and inversion using a polychromatic cone beam", Journal of Applied Crystallography, vol. 48, pp. 334-343, 2015.
T. Roelandts, K. J. Batenburg, E. Biermans, C. Kubel, S. Bals, and J. Sijbers, "Accurate segmentation of dense nanoparticles by partially discrete electron tomography", Ultramicroscopy, vol. 114, pp. 96-105, 2012. Download paper (1.71 MB)
W. Van den Broek, J. Verbeeck, S. De Backer, P. Scheunders, and D. Schryvers, "Acquisition of the EELS data cube by tomographic reconstruction", Ultramicroscopy, vol. 106, no. 3, pp. 269-276, March, 2006.
J. Sijbers, A J. den Dekker, M. Verhoye, A. Van Der Linden, and D. Van Dyck, "Adaptive anisotropic noise filtering for magnitude MR data", Magnetic Resonance Imaging, vol. 17, no. 10, pp. 1533-1539, 1999. Download full paper (366 KB)
K. J. Batenburg, and J. Sijbers, "Adaptive thresholding of tomograms by projection distance minimization", Pattern Recognition, vol. 42, no. 10, pp. 2297-2305, April, 2009. Download full paper (1.05 MB)
A. Dabravolski, K. J. Batenburg, and J. Sijbers, "Adaptive zooming in X-ray computed tomography", Journal of X-Ray Science and Technology, vol. 22, no. 1, pp. 77-89, 2014. Download paper (3.77 MB)
S. Van Aert, A. De Backer, G. T. Martinez, A J. den Dekker, D. Van Dyck, S. Bals, and G. Van Tendeloo, "Advanced electron crystallography through model-based imaging", IUCrJ, vol. 3, no. 1, Jan, 2016.
B. Goris, T. Roelandts, K. J. Batenburg, H. Heidari Mezerji, and S. Bals, "Advanced reconstruction algorithms for electron tomography: from comparison to combination", Ultramicroscopy, vol. 127, pp. 40–47, 2013.
W. Guo, C. - C. Hung, P. Scheunders, B. - C. Kuo, Y. Lan, and Z. Ma, "Advanced techniques for computational and information sciences", Mathematical Problems in Engineering, Article ID 5623913, vol. 2016, 2016.
P. Reischig, A. King, L. Nervo, N. Viganó, Y. Guilhem, W J. Palenstijn, K. J. Batenburg, M. Preuss, and W. Ludwig, "Advances in X-ray diffraction contrast tomography: flexibility in the setup geometry and application to multiphase materials", Journal of Applied Crystallography, vol. 46, issue 2, pp. 297 - 311, 04/2013.
A. Leemans, J. Sijbers, S. De Backer, E. Vandervliet, and P. M. Parizel, "Affine Coregistration of Diffusion Tensor Magnetic Resonance Images Using Mutual Information", Lecture Notes in Computer Science, vol. 3708, pp. 523-530, 2005. Download full paper (1.26 MB)
F. Bleichrodt, J. De Beenhouwer, J. Sijbers, and K. J. Batenburg, "Aligning Projection Images from Binary Volumes", Fundamenta Informaticae, vol. 135, pp. 1-22, 2014.
B. T. Antonsen, Y. Jiang, J. Veraart, H. Qu, H P. Nguyen, J. Sijbers, S. Von Hörsten, A. G. Johnson, and T. B. Leergaard, "Altered diffusion tensor imaging measurements in aged transgenic Huntington disease rats.", Brain structure & function, vol. 218, issue 3, pp. 767-78, 2013 May. Download full paper (645.02 KB)
A. Van Ombergen, L. Heine, S. Jillings, E. Roberts, B. Jeurissen, V. Van Rompaey, V. Mucci, S. Vanhecke, J. Sijbers, F. Vanhevel, et al., "Altered functional brain connectivity in patients with visually induced dizziness", NeuroImage: Clinical, 2017.
W. Jacquet, E. Nyssen, Y. Sun, S. De Munter, J. Sijbers, and C. Politis, "Alveolar Nerve Unfolding Technique for Synoptic Analysis: Visualization and Quantification of Inferior Alveolar Nerve Tracings in Three-dimensional Cone-Beam Computed Tomography.", The Journal of craniofacial surgery, vol. 24, issue 4, pp. e374-7, 2013 Jul.
A. Bernat, T. Huysmans, F. van Glabbeek, J. Sijbers, J. Gielen, and A. Van Tongel, "The anatomy of the clavicle: A Three-dimensional Cadaveric Study", Clinical anatomy, vol. 27, issue 5, pp. 712–723, 2013 Oct 21, 2014. paper (566.29 KB)
R. Pinho, K. G. Tournoy, and J. Sijbers, "Assessment and Stenting of Tracheal Stenosis using Deformable Shape Models", Medical Image Analysis, vol. 15, no. 2, pp. 250-266, 2011.
W. Van Aarle, W J. Palenstijn, J. De Beenhouwer, T. Altantzis, S. Bals, K. J. Batenburg, and J. Sijbers, "The ASTRA Toolbox: a platform for advanced algorithm development in electron tomography", Ultramicroscopy, vol. 157, pp. 35–47, 2015. Download paper (1.4 MB)
J. Gonnissen, A. De Backer, A J. den Dekker, J. Sijbers, and S. Van Aert, "Atom-counting in High Resolution Electron Microscopy: TEM or STEM - that’s the question", Ultramicroscopy, vol. 147, pp. 112–120, 2017.
B. Weyn, G. Van de Wouwer, A. Van Daele, P. Scheunders, D. Van Dyck, E. Van Marck, and W. Jacob, "Automated breast tumour diagnosis and grading based on wavelet chromatin texture description", Cytometry, vol. 33, pp. 32-40, 1998.

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